Roeder Lab Journal Covers |
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| PLoS Biology (May 2010) | Development (Dec. 2012) | MorphoGraphX eLife (May 2015) |
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| Plant Physiology (Dec. 2015) | Developmental Cell (July 2016) | eLife (March 2017) |
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| Molecular Plant (April 2017) | PNAS (April 2022) | Journal of Experimental Botany (Nov. 2023) |
Publications
2024
Kong, S., Zhu, M., Scarpin, M.R., Pan, D., Jia, L., Martinez, R.E., Alamos, S., Vadde, B.V.L., Garcia, H.G., Qian, S.-B., Brunkard, J.O., and Roeder, A.H.K. (2024). DRMY1 promotes robust morphogenesis in Arabidopsis by sustaining translation of cytokinin-signaling inhibitor proteins. Developmental Cell (Preprint in bioRxiv: DOI: 10.1101/2023.04.07.536060).
Clark, F.K., McGory, J., Russell, N.J., Formosa-Jordan, P., Roeder, A.H.K (2024) The receptor-like kinase ALE2 promotes giant cell formation in the sepal epidermis. Preprint on bioRxiv 2024.08.29.610297; doi: https://doi.org/10.1101/2024.08.29.610297
Yadav, A.S and Roeder, A.H.K. (2024). An optimized live imaging and multiple cell layer growth analysis approach using Arabidopsis sepals. Frontiers in Plant Science 15, 1449195. (Preprint in bioRxiv doi:
Clark, F.K., Weissbart, G., Wang, X., Harline, K., Li, C.-B., Formosa-Jordan, P., Roeder, A.H.K. (2024) A common pathway controls cell size in the sepal and leaf epidermis leading to a non-random pattern of giant cells. Preprint in bioRxiv 2024.07.26.605215; doi: https://doi.org/10.1101/2024.07.26.605215
Xu, S., He, X., Trinh, D.-C., Zhang, X., Wu, X., Qiu, D., Zhou, M., Xiang, D., Roeder, A.H.K., Hamant, O., Hong, L. (2024) A 3-component module maintains sepal flatness in Arabidopsis. Current Biology (Preprint in bioRxiv DOI: 10.1101/2023.12.06.570430.)
Kong, S., Zhu, M., Roeder, A.H.K. (2024) Self-organization underlies developmental robustness in plants. Cells & Development
Kong, S., Zhu, M., Pan, D., Lane, B., Smith, R.S., Roeder, A.H.K. (2024) Tradeoff Between Speed and Robustness in Primordium Initiation Mediated by Auxin-CUC1 Interaction. Nature Communications 15, 5911. (Preprint in bioRxiv DOI: 10.1101/2023.11.30.569401)
Vadde, B.V.L*, Russell, N.J.* Bagde, S.R., Askey,B., Saint-Antoine, M.M., Brownfield, B.A., Mughal, S., Apprill, L.E., Khosla, A., Clark, F.K., Schwarz, E.M., Alseekh, S., Fernie, A.R., Singh, A., Schrick, K., Fromme, J.C., Skirycz, A., Formosa-Jordan, P., Roeder, A.H.K. (2024). The transcription factor ATML1 maintains giant cell identity by inducing synthesis of its own (very) long-chain fatty acid-containing ligands. Preprint in bioRxiv 2024.03.14.584694; doi: 10.1101/2024.03.14.584694.
Fruleux, A., Hong, L., Roeder, A.H.K., Li, C-B., and Boudaoud, A. (2024) Growth couples temporal and spatial fluctuations of tissue properties during morphogenesis. PNAS 121, e2318481121. (Preprint in bioRxiv DOI: 10.1101/2023.10.23.563640).
Rusnak, B.*, Clark, F.K.*, Vadde, B.V.L., and Roeder, A.H.K. (2024). What is a plant cell type in the age of single cell biology? It’s complicated. Annual Review of Cell and Developmental Biology. 40
Stuebler, M. Manzer, Z.A., Liu, H.-Y., Miller, J., Richter, A., Krishnan, S., Selivanovitch, E., Banuna, B., Jander, G., Reimhult, E., Zipfel, W.R., Roeder, A.H.K., Piñeros, M.A., and Daniel, S. (2024). Plant membrane-on-a-chip: A platform for studying plant membrane proteins and lipids. ACS Applied Materials & Interfaces 16, 20092–20104.
2023
Burda, I., Martin, A.C., Roeder, A.H.K., Collins, M.A. (2023) The dynamics and biophysics of shape formation: Common themes in plant and animal morphogenesis. Developmental Cell 58, 2850-2866.
Burda, I., Li, C. Clark, F., and Roeder, A. (2023) Robust organ size in Arabidopsis is primarily governed by cell growth rather than cell division patterns. Preprint in bioRxiv DOI: 10.1101/2023.11.11.566685.
Trozzi, N., Lane, B., Perruchoud, A., Wang, Y. Hörmayer, L., Ansel, M., Mollier, C., Malivert, A., Clark, F., Reichgelt, T., Roeder, A.H.K., Hamant, O., Boudaoud, A., Kwiatkowska, D., Runiona, A., Smith, R.S., and Majda, M. (2023) Puzzle cell shape emerges from the interaction of growth with mechanical constraints. Preprint in bioRxiv DOI: 10.1101/2023.10.01.560343.
Singh Yadav, A., Hong, L., Klees, P.M., Kiss, A., He, X., Barrios, I.S., Heeney, M., Galang, A.M.D, Smith, R.S., Boudaoud, A., Roeder, A.H.K. (2023) Growth directions and stiffness across cell layers determine whether tissues stay smooth or buckle. Preprint in bioRxiv DOI:10.1101/2023.07.22.549953.
Cammarata, J., Roeder, A.H.K., Scanlon, M. J., (2022). The ratio of auxin to cytokinin controls leaf development and meristem initiation in Physcomitrium patens. Journal of Experimental Botany 74, 6541–6550. DOI: 10.1093/jxb/erad299 (Preprint in BioRxiv DOI: 10.1101/2022.12.05.519125.)
Roeder AHK (2023) Sepals. In: Encyclopedia of Life Sciences (ELS). John Wiley & Sons, Ltd: Chichester. DOI: 10.1002/9780470015902.a0029560
Interdisciplinary Plant Science Consortium (2023). Inclusive collaboration across plant physiology and genomics: Now is the time! Plant Direct 7, e493.
Hong, L.*, Rusnak, B.*, Ko, C.S.*, Xu, S., He, X., Qiu, D., Kang, S.E., Pruneda-Paz, J. L., Roeder, A. H. K.(2023). Enhancer activation via TCP and HD-ZIP and repression by Dof transcription factors mediate giant cell-specific expression. Plant Cell 35, 2349–2368. DOI 10.1093/plcell/koad054. (Preprint in BioRxiv DOI: 10.1101/2020.08.28.270454)
- Plant Cell In Brief highlighting our paper: Humberto Herrera-Ubaldo (2023) Making a giant: Uncovering gene regulation underlying the formation of giant cells in Arabidopsis sepals. Plant Cell 35, 1966-1967.
Harline, K. and Roeder, A.H.K. (2023). An optimized pipeline for live imaging whole Arabidopsis leaves at cellular resolution. Plant Methods 19: 10. (Preprint in BioRxiv DOI: 10.1101/2022.11.01.514724).
2022
Harline, K., Fruleux, A., Lane, B., Mosca, G., Strauss, S., Tavakolian, N. Satterlee, J., W., Li, C.-B., Singh, A., Smith, R.S., Boudaoud, A., Roeder, A.H.K. (2022). Dynamic growth re-orientation orchestrates flatness in the Arabidopsis leaf. Preprint in BioRxiv DOI: 10.1101/2022.11.01.514736.
Cammarata, J., Farfan, C.M., Scanlon, M., and Roeder, A.H.K. (2022). Cytokinin-CLAVATA crosstalk is an ancient mechanism regulating shoot meristem homeostasis in land plants. PNAS 119, e2116860119.
Burda, I., and Roeder, A.H.K. (2022). Stepping on the molecular break: Slowing down proliferation to allow differentiation. Preview in Developmental Cell 57, 561-563.
Roeder, A.H.K., Otegui, M.S., Dixit, R., Anderson, C.T., Faulkner, C., Zhang, Y., Harrison, M.J., Kirchhelle, C., Goshima, G., Coate, J.E., Doyle, J.J., Hamant, O., Sugimoto, K., Dolan, L., Meyer, H., Ehrhardt, D.W., Boudaoud, A., and Messina, C. (2022). Fifteen compelling open questions in plant cell biology. Plant Cell 34, 72–102. DOI:10.1093/plcell/koab225
Weijers, D., Bezanilla, M., Jiang, L., Roeder, A.H.K., and Williams, M. (2022). Back to the roots: A focus on plant cell biology. Plant Cell 34, 1-3. DOI: 10.1093/plcell/koab278.
2021
Roeder, A.H.K. (2021) Arabidopsis sepals: A model system for the emergent process of morphogenesis. Quantitative Plant Biology 2, 314.
Harline, K., Martínez-Gómez, J., Specht, C.D., and Roeder, A.H.K. (2021) A life cycle for modeling biology at different scales. Front Plant Sci 12, 710590.
2020
Harline, K., and Roeder, A.H.K. (2020) Plant Morphogenesis: Mechanical Feedback Position is Crucial in Organ Flattening. Dispatch in Current Biology 30, R168-R170. DOI: 10.1016/j.cub.2020.08.027
Zhu, M., Chen, W., Mirabet, V., Hong, L., Bovio, S., Strauss, S., Schwarz, E.M., Tsugawa, S., Wang, Z., Smith, R.S.S, Li, C.-B., Hamant, O., Boudaoud, A., Roeder, A.H.K. (2020) Robust organ size requires robust timing of initiation orchestrated by focused auxin and cytokinin signalling. Nature Plants 6, 686-698.
- News: Cornell Chronicle “Study explores how multiple organs end up the same size.”
- News: HFSP: “Organ size reproducibility requires robust timing of organ initiation.”
Moreno, S., Canales, J., Hong, L., Robinson, D., Roeder, A.H.K., and Gutiérrez, R.A. (2020) Nitrate defines shoot size through compensatory roles for endoreduplication and cell division in Arabidopsis thaliana. Current Biology 30, 1-13.
Zhu, M., and Roeder, A.H.K. (2020) Plants are better engineers: the complexity of plant organ morphogenesis. Current Opinion in Genetics and Development 63, 16–23.
Vadde, B.V.L., and Roeder, A.H.K. (2020) Can the French flag and reaction–diffusion models explain flower patterning? Celebrating the 50th Anniversary of the French flag model. Journal of Experimental Botany 26, 962–12.
2019
Ripoll, J.J., Zhu, M., Brocke, S., Hon, C.T., Yanofsky, M.F., Boudaoud, A., and Roeder, A.H.K. (2019) Growth dynamics of the Arabidopsis fruit is mediated by cell expansion. PNAS 116, 25333-25342. doi:10.1073/pnas.1914096116.
Roeder, A.H.K. (2019) Computational Image Processing in Microscopy. Plant Cell Teaching tools in Plant Biology. doi/10.1105/tpc.119.tt0819
Cammarata, J., Roeder, A.H.K., and Scanlon, M.J. (2019) Cytokinin and CLE signaling are highly intertwined developmental regulators across tissues and species. Current Opinion in Plant Biology 51, 96-104.
Roeder, A.H.K. and Harrison, C.J. (2019) Editorial Overview: Scaling development through the plant tree of life. Current Opinion in Plant Biology 47, A1-A4.
2018
Robinson, Dana Olivia, Coate, Jeremy E, Singh, Abhyudai, Hong, Lilan, Bush, Maxwell S., Doyle, Jeff J., Roeder, Adrienne H. K. (2018) Ploidy and Size at Multiple Scales in the Arabidopsis Sepal. Plant Cell doi:10.1105/tpc.18.00344
Cammarata, Joseph and Roeder, Adrienne H.K. (2018) Development: Cell Polarity Is Coordinated over an Entire Plant Leaf. Current Biology 28, R884-R887.
Whitewoods, Chris D., Cammarata, Joseph, Nemec Venza, Zoe, Sang, Stephanie, Crook, Ashley D., Aoyama, Tsuyoshi, Wang, Xiao Y., Waller, Manuel, Kamisugi, Yasuo, Cuming, Andrew C., Szövényi, Péter, Nimchuk, Zachary L., Roeder, Adrienne H.K., Scanlon, Michael J. and Harrison, C. Jill. (2018) CLAVATA Was a Genetic Novelty for the Morphological Innovation of 3D Growth in Land Plants. Current Biology 28, 1-12. doi:10.1016/j.cub.2018.05.068.
- News: Discover Magazine “Divide and Conquer: How cell splitting lets plants thrive on land.”
- News: The Node “Testing Zimmermann’s Telome Theory”
- News: Cornell Chronicle “3D growth allowed plants to move from water to land”
Hong, Lilan, Dumond, Mathilde, Zhu, Mingyuan, Tsugawa, Satoru, Li, Chun-Biu, Boudaoud, Arezki, Hamant, Olivier, and Roeder, Adrienne H.K. (2018) Heterogeneity and robustness in plant morphogenesis: from cells to organs. Annual Review of Plant Biology. 69, 18.1–18.27.
Sapala, Aleksandra, Runions, Adam, Routier-Kierzkowska, Anne-Lise, Das Gupta, Minak, Hong, Lilan, Hofhuis, Hugo, Verger, Stéphane, Mosca, Gabriella, Li, Chun-Biu, Hay, Angela, Hamant, Olivier, Roeder, Adrienne H.K., Tsiantis, Miltos, Prusinkiewicz, Przemyslaw, Smith, Richard S. (2018) Why plants make puzzle-shaped cells, and how their shape emerges. eLife. 7, e32794.
- News: Science Editors’ Choice: Plant Puzzle Patterns
- News: HFSP “Why do plants make puzzle-shaped cells?
Roeder, Adrienne .H.K. Use it or average it: stochasticity in plant development. Current Opinion in Plant Biology 41, 8-15. (2018)
2017
Tsugawa, Satoru, Hervieux, Nathan, Kierzkowski, Daniel, Routier-Kierzkowska, Anne-Lise, Sapala, Aleksandra, Hamant, Olivier, Smith, Richard S., Roeder, Adrienne H.K., Boudaoud, A., and Li, C.-B. Clones of cells switch from reduction to enhancement of size variability in Arabidopsis sepals. Development 144, 4398-4405. (2017)
Robinson, Dana O. and Roeder, Adrienne H.K. Small RNAs turn over a new leaf as morphogens. Developmental Cell 43, 253-254. (2017)
Hong, Lilan, Brown, Joel, Segerson, Nicholas A., Rose, Jocelyn K.C., Roeder, Adrienne H.K. CUTIN SYNTHASE 2 Maintains Progressively Developing Cuticular Ridges in Arabidopsis Sepals. Molecular Plant (2017)
Meyer Heather M., Teles José, Formosa-Jordan Pau, Refahi Yassin, San-Bento Rita, Ingram Gwyneth, Jönsson Henrik, Locke James C. W., & Roeder Adrienne H.K. Fluctuations of the transcription factor ATML1 generate the pattern of giant cells in the Arabidopsis sepaleLife (2017)
- News: GARNet Community blog post by Gearing Parry “Passing the threshold gives a Giant output!””
- News: Cornell Chronicle “Random process may determine specialized cells in organs”
- News: Sainsbury Laboratory News “How to become a giant cell? Fluctuations in a key regulator guide cell size in flower organs.”
- News: eLife “Cell size matters in flowers”
- News: The Node How a cell becomes a giant: a fluctuation-driven patterning mechanism
- News: F1000 Recommendation
Hong Lilan & Roeder Adrienne H.K. Plant Development: Differential Growth Rates in Distinct Zones Shape an Ancient Plant FormCurrent Biology (2017)
2016
Schwarz Erich M. & Roeder Adrienne H.K. Transcriptomic Effects of the Cell Cycle Regulator LGO in Arabidopsis SepalsFrontiers in Plant Science (2016)
Hong Lilan, Dumond Mathilde, Tsugawa Satoru, Sapala Aleksandra, Routier-Kierzkowska Anne-Lise, Zhou Yong, Chen Catherine, Kiss Annamaria, Zhu Mingyuan, Hamant Olivier, Smith Richard S., Komatsuzaki Tamiki, Li Chun-Biu, Boudaoud Arezki, & Roeder Adrienne H.K. Variable Cell Growth Yields Reproducible Organ Development through Spatiotemporal Averaging Developmental Cell (2016)
- News: Developmental Cell “Right Place Right Time: Heterogeneity-Driven Organ Geometry”
- News: Cornell Chronicle “Flower bud uniformity beholden to time and space”
- News: F1000 Recommendation
- News: Cornell Daily Sun “Scientists Discover New Means of Modeling Cell Development”
- News: HFSP “Order from disorder: random cells make reproducible organs”
Hervieux Nathan, Dumond Mathilde, Sapala Aleksandra, Routier-Kierzkowska Anne-Lise, Kierzkowski Daniel, Roeder Adrienne H.K., Smith Richard S., Boudaoud Arezki, & Hamant Olivier A Mechanical Feedback Restricts Sepal Growth and Shape in Arabidopsis.Current Biology. (2016)
Gillmor C. Stewart, Roeder Adrienne H. K., Sieber Patrick, Somerville Chris, & Lukowitz Wolfgang (2016) A genetic screen for mutations affecting cell division in the Arabidopsis thaliana embryo identifies seven loci required for cytokinesis. PLoS One.
2015
Tauriello Gerardo, Meyer Heather M., Smith Richard S., Koumoutsakos Petros & Roeder Adrienne H.K.(2015) Variability and constancy in cellular growth of Arabidopsis sepals. Plant Physiol.
Barbier de Reuille P, Routier-Kierzkowska A, Kierzkowski D, Bassel GW, Schupach T, Tauriello G, Bajpai N, Strauss S, Weber A, Kiss A, Burian A, Hofhuis H, Sapala A, Lipowczan M, Heimlicher M, Robinson S, Bayer E, Basler K, Koumoutsakos P, Roeder AHK, Aegerter-Wilmsen T, Nakayama N, Tsiantis M, Hay A, Kwiatkowska D, Xenarios I, Kuhlemeier C, Smith RS. (2015) MorphoGraphX: A platform for quantifying morphogenesis in 4D. eLife.
Robinson Dana Olivia & Roeder Adrienne H.K. (2015) Themes and variations in cell type patterning in the plant epidermis. Current Opinion in Genetics and Development.
2014
Qu X, Chatty PR, Roeder AHK. (2014) Endomembrane trafficking protein SEC24A regulates cell size patterning in Arabidopsis thaliana. Plant Physiol.
Meyer HM, Roeder AHK. (2014) Stochasticity in plant cellular growth and patterning. Front. Plant Sci.
2013
Fick RHJ , Fedorov D, Roeder AHK, and Manjunath BS. Simultaneous cell tracking and image alignment in 3D CLSM imagery of growing Arabidopsis thaliana sepals. (ISBI), 2013 IEEE 10th International Symposiumon Biomedical Imaging
2012
Marshall WF, Young KD, Swaffer M, Wood E, Nurse P, Kimura A, Franke J, Wallingford J, Walbot V, Qu X and Roeder AHK. (2012) What determines cell size? BMC Biology
Roeder AHK, Cunha A, Ohno CK, Meyerowitz EM. (2012) Cell cycle regulates cell type in the Arabidopsis sepal. Development
Roeder AHK, Cunha A, Burl MC, Meyerowitz EM. (2012) A computational image analysis glossary for biologists. Development
Roeder, AHK (2012) When and where plant cells divide: a perspective from computational modeling. Current Opinion in Plant Biology. 15:638–644
Cunha A, Tar, PT, Roeder, AHK, Altinok A, Mjolsness E, Meyerowitz EM (2012) Computational Analysis of Live Cell Images of the Arabidopsis thaliana Plant. Methods in Cell Biology: Computational Methods in Cell Biology 110, 285-323.
Shapiro, BE, Jönsson, H, Sahlin, P, Heisler, M Roeder, AHK, Burl, M, Meyerowitz, EM, Mjolsness ED (2012) Tessellations and Pattern Formation in Plant Growth and Development. Tessellations in the Sciences: Virtues, Techniques and Applications of Geometric Tilings Springer Verlag
2011
Ripoll JJ, Roeder, AHK, Ditta GS, Yanofsky MF (2011) A novel role for the floral homeotic gene APETALA2 during Arabidopsis fruit development. Development 138, 5167-5176
Roeder, AHK, Tarr, PT, Tobin C, Zhang X, Chickarmane V, Cunha A, Meyerowitz, EM (2011) Computational Morphodynamics: integrating development over space and time. Nature Reviews Molecular Cell Biology 12, 265-273
2010
Jun J, Fiume E, Roeder AHK, Meng L, Sharma VK, Osmont KS, Bake, C, Ha CM, Meyerowitz EM, Feldman LJ, Fletcher JC (2010) Comprehensive analysis of CLE polypeptide signaling gene expression and over-expression activity in Arabidopsis. Plant Physiology 154, 1721-1736
Roeder AHK, Chickarmane V*, Cunha A, Obara B, Manjunath BS, Meyerowitz EM (2010) Variability in the Control of Cell Division Underlies Sepal Epidermal Patterning in Arabidopsis thaliana. PLoS Biology 8, e1000367. doi:1000310.1001371/journal.pbio.1000367
Roeder AHK (2010) Sepals. In: Encyclopedia of Life Sciences (ELS). John Wiley & Sons, Ltd: Chichester. DOI: 10.1002/9780470015902.a0002064.pub2
Chickarmane V, Roeder AHK, Tarr PT, Cunha A, Tobin C, Meyerowitz EM (2010)
Computational Morphodynamics: A Modeling Framework to Understand Plant Growth. Annual Review of Plant Biology 61, 65–87
Cunha A, Roeder AHK, Meyerowitz EM (2010) Segmenting the Sepal and Shoot Apical Meristem of Arabidopsis thaliana. 32nd Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC’10). Buenos Aires, Argentina, September 1-4 2010.
2009
Harrison CJ, Roeder AHK, Meyerowitz EM, Langdale JA (2009) Local Cues and Asymmetric Cell Divisions Underpin Body Plan Transitions in the Moss Physcomitrella patens. Current Biology 19, 461-471
2006
Burl M, Roeder AHK, Ohno C, Mjolsness E, Meyerowitz EM (2006). Automatic Extraction of 3D Nuclear Bounding Surfaces from CLSM Imagery of Developing Arabidopsis Flowers, Workshop on Multiscale Biological Imaging, Data Mining and Bioinformatics. University of California, Santa Barbara, CA, USA, Sept 7-8, 2006.
2005
Yu Q, Moore PH, Albert HH, Roeder AHK, Ming R (2005) Cloning and characterization of a FLORICULA/LEAFY ortholog, PFL, in polygamous papaya. Cell Research 15, 576-584
Roeder AHK, Yanofsky MF (2005) Fruit Development in Arabidopsis. The Arabidopsis Book, eds. C.R. Somerville and E.M. Meyerowitz, American Society of Plant Biologists, Rockville, MD.
2004
Lukowitz W, Roeder AHK, Parametre D, Somerville C. (2004)
A MAPKK kinase gene regulates extra-embryonic cell-fate in Arabidopsis. Cell 116, 109-119
Liljegren SJ, Roeder AHK, Kempin SA, Gremski K, Østergaard L, Guimil S, Reyes D K, Yanofsky MF (2004) Control of fruit patterning in Arabidopsis byINDEHISCENT. Cell 116, 843-853
2003
Roeder AHK, Ferrándiz C, Yanofsky MF (2003) The role of the REPLUMLESS homeodomain protein in patterning the Arabidopsis fruit. Current Biology 13, 1630-1635
2001
Roeder AHK, Yanofsky MF (2001) Unraveling the mystery of double flowers. Developmental Cell 1,4-6